Tool aggregation breaks with human in the loop tool calls

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Hello,

I am not sure if this has been brought up before, but I could not find a similar topic here or in github issues.

I am using /sessions/runs endpoint to re-hydrate a session and some tools are not showing up on refresh. The issue seems to be with how agno aggregates tools with the RunPaused event present. If a tool call happens before the pause event, it is not represented in the tools array returned by the endpoint.

Here is a simple example you can replicate the issue with:

def subtract(a: float, b: float) -> float:
    """Subtract b from a.
    
    Args:
        a: First number.
        b: Number to subtract.
    """
    return a - b

@tool(requires_confirmation=True)
def multiply(a: float, b: float) -> float:
    """Multiply two numbers.
    
    Args:
        a: First number.
        b: Second number.
    """
    return a * b

With this example, if the subtract is called after multiply everything works as expected. But, if subtract is called before, the tools array only returns the multiply tool call.

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You can try these prompt to test with:
multiply 5 by 5 and then subtract 5 from the result - works
subtract 5 from 25, then multiply 5 by 5 - does not work as expected

Thank you for your help.